Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEN95757.1Hypothetical protein; COG4189 Predicted transcriptional regulator. (309 aa)    
Predicted Functional Partners:
AEN95754.1
Alpha-N-arabinofuranosidase; COG3940 Predicted beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.719
AEN95758.1
Extracellular solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.670
AEN95761.1
COG3534 Alpha-L-arabinofuranosidase.
 
     0.512
AEN95753.1
Hypothetical protein; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.508
AEN96273.1
Hypothetical protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.503
AEN96276.1
Hypothetical protein; COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.
  
     0.502
AEN95755.1
Hypothetical protein.
 
     0.448
AEN95763.1
COG3533 Uncharacterized protein conserved in bacteria.
 
     0.447
AEN97156.1
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
 
     0.441
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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