Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN95879.1Transcriptional regulator. (79 aa)    
Predicted Functional Partners:
AEN95880.1
Sortase.
 
     0.960
AEN95881.1
Membrane protein.
 
     0.960
AEN98305.1
Hypothetical protein; COG2944 Predicted transcriptional regulator.
  
     0.511
AEN95878.1
Glycoside hydrolase family 3 protein; COG1472 Beta-glucosidase-related glycosidases.
       0.466
AEN95543.1
Hypothetical protein.
  
     0.460
AEN95877.1
Hypothetical protein; COG0546 Predicted phosphatases.
       0.431
AEN97810.1
Hypothetical protein; COG2755 Lysophospholipase L1 and related esterases.
  
     0.420
AEN97819.1
COG0842 ABC-type multidrug transport system, permease component.
  
     0.415
AEN96996.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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