Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN96000.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
AEN95998.1
Hypothetical protein.
       0.773
AEN95999.1
Hypothetical protein.
       0.773
AEN96001.1
Hypothetical protein.
       0.773
AEN96002.1
Hypothetical protein; COG3593 Predicted ATP-dependent endonuclease of the OLD family.
       0.608
AEN96003.1
Hypothetical protein; COG0210 Superfamily I DNA and RNA helicases.
       0.608
AEN95997.1
Hypothetical protein.
       0.605
AEN95996.1
Hypothetical protein; COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.
       0.582
AEN96004.1
Hypothetical protein; COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen.
       0.482
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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