Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN96137.1Hypothetical protein. (85 aa)    
Predicted Functional Partners:
AEN96944.1
Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.815
AEN96942.1
Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.806
AEN97463.1
Stage II sporulation protein R.
 
     0.799
AEN95857.1
Stage V sporulation AC, SpoVAC.
  
    0.788
AEN96678.1
Peptidase S14 ClpP; COG0740 Protease subunit of ATP-dependent Clp proteases.
 
   
 0.780
AEN96932.1
Stage III sporulation protein AA; COG3854 Uncharacterized protein conserved in bacteria.
  
    0.771
AEN96446.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
     0.762
AEN95870.1
Stage V sporulation protein AD; COG0183 Acetyl-CoA acetyltransferase.
  
    0.759
AEN97465.1
Spore germination protein B1.
  
    0.758
AEN96590.1
Nucleoside recognition domain-containing protein; COG3314 Uncharacterized protein conserved in bacteria.
  
     0.754
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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