Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN96162.1Hypothetical protein. (187 aa)    
Predicted Functional Partners:
AEN96163.1
Hypothetical protein.
       0.639
AEN96164.1
COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
       0.626
AEN96165.1
Hypothetical protein.
       0.626
AEN96166.1
Hypothetical protein.
       0.626
AEN96167.1
Hypothetical protein.
       0.602
AEN96168.1
Hypothetical protein.
       0.497
AEN96161.1
DegV family protein; COG1307 Uncharacterized protein conserved in bacteria.
       0.445
AEN96169.1
Hypothetical protein.
       0.436
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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