STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN96241.1COG1555 DNA uptake protein and related DNA-binding proteins. (258 aa)    
Predicted Functional Partners:
AEN96245.1
COG0658 Predicted membrane metal-binding protein.
 
  
 0.914
AEN96243.1
COG0642 Signal transduction histidine kinase.
       0.826
AEN96244.1
Hypothetical protein.
  
    0.804
AEN96242.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.785
AEN98258.1
Hypothetical protein; COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
   
  
 0.730
AEN98321.1
dCMP deaminase; COG2131 Deoxycytidylate deaminase.
  
  
 0.644
AEN97593.1
COG1040 Predicted amidophosphoribosyltransferases.
  
  
 0.616
AEN96405.1
Conserved hypothetical membrane spanning protein; COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily).
  
  
 0.573
AEN96246.1
COG1466 DNA polymerase III, delta subunit.
     
 0.566
AEN96240.1
Hypothetical protein; COG2182 Maltose-binding periplasmic proteins/domains.
       0.525
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.