Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEN96287.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
AEN96288.1
COG2407 L-fucose isomerase and related proteins.
 
   
 0.925
xylB
Xylulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
  
 0.907
AEN96286.1
Beta-glucosidase-like glycosyl hydrolase; COG1472 Beta-glucosidase-related glycosidases.
 
    0.747
AEN96332.1
Rhamnulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
  
 0.692
AEN96284.1
COG1175 ABC-type sugar transport systems, permease components.
       0.559
AEN96285.1
COG0395 ABC-type sugar transport system, permease component.
       0.559
AEN96283.1
Hypothetical protein; COG1653 ABC-type sugar transport system, periplasmic component.
       0.438
AEN96344.1
Flagellin lysine-N-methylase.
  
     0.435
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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