STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN96321.1COG1609 Transcriptional regulators. (376 aa)    
Predicted Functional Partners:
AEN97041.1
COG0067 Glutamate synthase domain 1.
    
 
 0.797
AEN95787.1
Transcriptional regulator (LacI family) protein; COG1609 Transcriptional regulators.
  
     0.739
AEN97155.1
COG1609 Transcriptional regulators.
  
     0.719
AEN97262.1
COG1609 Transcriptional regulators.
  
     0.703
AEN96323.1
L-ribulokinase (putative); COG1070 Sugar (pentulose and hexulose) kinases.
 
 
 
 0.687
AEN97307.1
Alanine racemase; COG1609 Transcriptional regulators.
  
     0.671
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.654
AEN96320.1
RNAse H family protein; COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein.
       0.645
AEN96322.1
Glycoside hydrolase clan GH-D.
       0.645
AEN96319.1
Hypothetical protein.
       0.619
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.