STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN96547.1COG1664 Integral membrane protein CcmA involved in cell shape determination. (279 aa)    
Predicted Functional Partners:
AEN96517.1
Flagellar motor switch protein; COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation.
  
 
 
 0.850
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.815
AEN98269.1
Hypothetical protein.
  
 
 
 0.810
AEN96546.1
Polysaccharide deacetylase Est4C; COG0726 Predicted xylanase/chitin deacetylase.
 
     0.782
AEN96744.1
Hypothetical protein.
  
     0.773
AEN95313.1
COG1345 Flagellar capping protein.
  
     0.771
AEN96515.1
Hypothetical protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.771
AEN95586.1
Hypothetical protein.
 
     0.770
AEN96717.1
Hypothetical protein.
  
     0.770
AEN96508.1
Hypothetical protein.
  
     0.769
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.