Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEN96631.1Phage integrase family protein; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (349 aa)    
Predicted Functional Partners:
AEN96632.1
COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; Belongs to the TtcA family.
  
    0.779
AEN97461.1
Hypothetical protein.
  
     0.607
dtd
D-Tyr-tRNAtyr deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
       0.539
AEN98244.1
Hypothetical protein.
  
     0.528
AEN97385.1
Hypothetical protein.
  
     0.516
AEN97590.1
Hypothetical protein.
  
     0.508
AEN96763.1
Hypothetical protein.
  
     0.496
rpoZ
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.490
AEN97593.1
COG1040 Predicted amidophosphoribosyltransferases.
  
    0.483
rplQ
COG0203 Ribosomal protein L17.
  
 
   0.474
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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