Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN96857.1Hypothetical protein. (401 aa)    
Predicted Functional Partners:
AEN96858.1
Transporter; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
   
 0.907
AEN96859.1
Glycosyltransferase.
 
     0.851
AEN96860.1
Type 1 dockerin.
 
     0.849
AEN96866.1
COG4878 Uncharacterized protein conserved in bacteria.
 
     0.845
AEN96851.1
ABC transporter ATP-binding protein/permease; COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     0.817
AEN96862.1
COG0438 Glycosyltransferase.
 
     0.817
AEN96867.1
Hypothetical protein.
 
     0.806
AEN96864.1
COG4267 Predicted membrane protein.
 
     0.797
AEN96849.1
Hypothetical protein; COG0681 Signal peptidase I.
 
     0.793
AEN96868.1
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
     0.789
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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