Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN96925.1Hypothetical protein. (240 aa)    
Predicted Functional Partners:
AEN96926.1
Hypothetical protein.
 
  
 0.997
AEN96928.1
Sporulation stage III, protein AE.
 
  
 0.981
AEN96929.1
Stage III sporulation protein AD.
 
  
 0.964
AEN96930.1
Stage III sporulation protein AC.
 
  
 0.962
AEN96927.1
Hypothetical protein.
  
  
 0.954
AEN96932.1
Stage III sporulation protein AA; COG3854 Uncharacterized protein conserved in bacteria.
 
  
 0.944
AEN96931.1
Hypothetical protein.
  
  
 0.889
AEN96249.1
Stage II sporulation protein P.
  
   
 0.852
AEN97730.1
COG1388 FOG: LysM repeat.
  
  
 0.812
AEN96666.1
Sporulation protein YqfD.
  
  
 0.790
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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