Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97084.1COG4676 Uncharacterized protein conserved in bacteria. (628 aa)    
Predicted Functional Partners:
AEN97083.1
Hypothetical protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
    0.542
AEN97082.1
Hypothetical protein.
       0.474
AEN96867.1
Hypothetical protein.
  
     0.462
AEN96868.1
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
     0.454
rpmF
COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
       0.434
AEN97086.1
COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.
       0.405
AEN96866.1
COG4878 Uncharacterized protein conserved in bacteria.
  
     0.401
AEN97284.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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