Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97184.1Hypothetical protein. (288 aa)    
Predicted Functional Partners:
AEN97179.1
Hypothetical protein; COG3451 Type IV secretory pathway, VirB4 components.
 
   
 0.871
AEN97180.1
COG2059 Chromate transport protein ChrA.
 
     0.860
AEN97178.1
NLP/P60 protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
     0.811
AEN97176.1
Hypothetical protein.
 
     0.805
AEN97837.1
Hypothetical protein; COG3451 Type IV secretory pathway, VirB4 components.
 
   
 0.781
AEN97183.1
SpoVG family protein; COG2088 Uncharacterized protein, involved in the regulation of septum location.
 
     0.780
AEN95495.1
Hypothetical protein; COG3451 Type IV secretory pathway, VirB4 components.
 
   
 0.774
AEN97220.1
TRAG family protein; COG3505 Type IV secretory pathway, VirD4 components.
 
     0.773
AEN97843.1
Hypothetical protein.
 
     0.772
AEN97844.1
Plasmid transfer factor-related protein; COG3505 Type IV secretory pathway, VirD4 components.
 
     0.769
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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