STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97234.1Glycoside hydrolase family 2 protein; COG3250 Beta-galactosidase/beta-glucuronidase. (1012 aa)    
Predicted Functional Partners:
AEN97404.1
COG3345 Alpha-galactosidase.
 
 
 0.944
AEN96404.1
COG3345 Alpha-galactosidase.
 
 
 0.941
AEN96322.1
Glycoside hydrolase clan GH-D.
 
  
  0.925
AEN96330.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.920
AEN98325.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.909
AEN97927.1
COG1940 Transcriptional regulator/sugar kinase.
     
 0.902
AEN97932.1
ROK family glucokinase; COG1940 Transcriptional regulator/sugar kinase.
     
 0.902
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.900
AEN97235.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.762
AEN97308.1
COG1874 Beta-galactosidase.
 
 0.745
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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