Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEN97462.1COG4506 Uncharacterized protein conserved in bacteria. (147 aa)    
Predicted Functional Partners:
argS
COG0018 Arginyl-tRNA synthetase.
  
    0.839
AEN97463.1
Stage II sporulation protein R.
       0.707
AEN97437.1
COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases.
   
    0.616
AEN96481.1
Spore coat protein CotJB.
  
     0.575
ipk
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
    0.539
AEN96177.1
Hypothetical protein; COG3707 Response regulator with putative antiterminator output domain.
  
     0.530
AEN96217.1
Hypothetical protein; COG1559 Predicted periplasmic solute-binding protein.
  
    0.523
AEN96930.1
Stage III sporulation protein AC.
  
     0.503
AEN97464.1
Spore germination protein-like protein YndE.
       0.500
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
    0.496
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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