STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97464.1Spore germination protein-like protein YndE. (682 aa)    
Predicted Functional Partners:
AEN97465.1
Spore germination protein B1.
 
  
 0.962
AEN97575.1
Hypothetical protein; COG0489 ATPases involved in chromosome partitioning.
  
     0.763
AEN97463.1
Stage II sporulation protein R.
 
   
 0.757
AEN95270.1
Multimeric flavodoxin domain-containing protein; COG0438 Glycosyltransferase.
  
     0.753
AEN97533.1
Hypothetical protein; COG4778 ABC-type phosphonate transport system, ATPase component.
  
     0.743
AEN97515.1
Glycosyl transferase family protein.
  
     0.741
AEN95236.1
Hypothetical protein.
  
     0.735
AEN95224.1
Hypothetical protein.
  
     0.733
AEN97639.1
COG0739 Membrane proteins related to metalloendopeptidases.
  
     0.711
AEN95596.1
COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.709
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.