Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97595.1Hypothetical protein; COG4120 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. (311 aa)    
Predicted Functional Partners:
AEN97594.1
Putative ABC transporter substrate-binding protein; COG2984 ABC-type uncharacterized transport system, periplasmic component.
    0.977
AEN97596.1
COG1101 ABC-type uncharacterized transport system, ATPase component.
 
    0.967
AEN96463.1
COG2984 ABC-type uncharacterized transport system, periplasmic component.
    0.926
AEN96465.1
Hypothetical protein; COG1101 ABC-type uncharacterized transport system, ATPase component.
 
    0.878
AEN96184.1
GGDEF domain-containing protein; COG2199 FOG: GGDEF domain.
  
  
 0.530
AEN97593.1
COG1040 Predicted amidophosphoribosyltransferases.
       0.456
AEN97592.1
Hypothetical protein.
       0.429
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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