STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97730.1COG1388 FOG: LysM repeat. (524 aa)    
Predicted Functional Partners:
AEN97732.1
Hypothetical protein.
 
     0.873
AEN96925.1
Hypothetical protein.
  
  
 0.812
AEN98327.1
Hypothetical protein; COG0789 Predicted transcriptional regulators.
  
    0.769
AEN96249.1
Stage II sporulation protein P.
  
     0.767
AEN96186.1
COG0629 Single-stranded DNA-binding protein.
  
     0.764
AEN95585.1
Spore coat protein CotS related protein; COG2334 Putative homoserine kinase type II (protein kinase fold).
 
     0.763
AEN96009.1
COG3976 Uncharacterized protein conserved in bacteria.
  
     0.762
AEN97968.1
Hypothetical protein; COG1388 FOG: LysM repeat.
  
     0.761
AEN97457.1
Hypothetical protein.
  
     0.757
AEN95238.1
Hypothetical protein; COG4942 Membrane-bound metallopeptidase.
  
   
 0.754
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.