Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97827.1Hypothetical protein. (95 aa)    
Predicted Functional Partners:
AEN97829.1
Hypothetical protein.
 
     0.833
AEN97834.1
Hypothetical protein.
 
     0.831
AEN97828.1
Hypothetical protein.
 
     0.816
AEN97832.1
COG4068 Uncharacterized protein containing a Zn-ribbon.
 
     0.780
AEN97826.1
Relaxase/mobilization nuclease family protein.
 
     0.761
AEN97835.1
COG0706 Preprotein translocase subunit YidC.
 
     0.760
AEN97830.1
Hypothetical protein.
 
     0.747
AEN97176.1
Hypothetical protein.
 
     0.736
AEN97846.1
Hypothetical protein; COG2200 FOG: EAL domain.
 
     0.726
AEN97161.1
Hypothetical protein.
  
     0.704
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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