Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97837.1Hypothetical protein; COG3451 Type IV secretory pathway, VirB4 components. (787 aa)    
Predicted Functional Partners:
AEN97838.1
Hypothetical protein.
     0.929
AEN97836.1
NLP/P60 protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
    0.912
AEN97842.1
Hypothetical protein.
 
   
 0.911
AEN97834.1
Hypothetical protein.
 
     0.870
AEN97844.1
Plasmid transfer factor-related protein; COG3505 Type IV secretory pathway, VirD4 components.
 
  
 0.869
AEN97843.1
Hypothetical protein.
 
     0.867
AEN97835.1
COG0706 Preprotein translocase subunit YidC.
 
     0.841
AEN97841.1
COG2088 Uncharacterized protein, involved in the regulation of septum location.
 
     0.810
AEN97839.1
MT-A70 family protein; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family.
 
     0.807
AEN97840.1
COG0863 DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.804
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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