Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97863.1Conjugative transposon protein. (107 aa)    
Predicted Functional Partners:
AEN97862.1
Conjugative transposon protein.
 
     0.955
AEN97860.1
Conjugative transposon FtsK/SpoIIIE-related protein.
 
     0.856
AEN97864.1
Collagen-binding surface protein.
 
     0.799
AEN97168.1
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
     0.704
AEN97825.1
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
     0.698
AEN97861.1
Hypothetical protein; COG1396 Predicted transcriptional regulators.
 
     0.607
AEN97222.1
Hypothetical protein.
 
    0.499
AEN95456.1
Hypothetical protein; COG0480 Translation elongation factors (GTPases).
  
     0.437
AEN97846.1
Hypothetical protein; COG2200 FOG: EAL domain.
 
    0.418
AEN95444.1
AadE.
  
     0.413
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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