Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEN97912.1Integrase family protein; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (353 aa)    
Predicted Functional Partners:
AEN97911.1
Helix-turn-helix domain-containing protein; COG1396 Predicted transcriptional regulators.
  
    0.774
AEN97254.1
Hypothetical protein.
  
     0.542
AEN97907.1
Hypothetical protein.
       0.528
AEN97908.1
Replisome organizer, phage associated protein.
       0.528
AEN97909.1
Hypothetical protein.
       0.528
AEN97910.1
Hypothetical protein.
       0.528
AEN96696.1
COG0287 Prephenate dehydrogenase.
  
    0.406
AEN97593.1
COG1040 Predicted amidophosphoribosyltransferases.
   
    0.401
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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