Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN97968.1Hypothetical protein; COG1388 FOG: LysM repeat. (500 aa)    
Predicted Functional Partners:
AEN97988.1
Hypothetical protein.
 
    0.774
AEN97457.1
Hypothetical protein.
  
     0.763
AEN97730.1
COG1388 FOG: LysM repeat.
  
     0.761
AEN97967.1
Hypothetical protein.
 
     0.758
AEN96009.1
COG3976 Uncharacterized protein conserved in bacteria.
  
     0.755
AEN97732.1
Hypothetical protein.
  
     0.750
AEN97749.1
Hypothetical protein.
  
    0.747
AEN96925.1
Hypothetical protein.
  
  
 0.720
AEN95698.1
Hypothetical protein.
  
     0.715
AEN97966.1
COG1286 Uncharacterized membrane protein, required for colicin V production.
 
    0.708
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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