Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98091.1Hypothetical protein. (642 aa)    
Predicted Functional Partners:
AEN96517.1
Flagellar motor switch protein; COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation.
   
 
 0.828
rsmH-2
Methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.773
AEN95487.1
Hypothetical protein.
  
     0.694
AEN97694.1
Hypothetical protein.
  
     0.660
AEN98089.1
COG3049 Penicillin V acylase and related amidases.
       0.623
AEN97326.1
Hypothetical protein.
  
     0.581
AEN97325.1
Plasmid recombination protein.
  
   
 0.576
AEN95667.1
ABC transporter ATP-binding protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
  
 0.517
AEN96245.1
COG0658 Predicted membrane metal-binding protein.
  
  
 0.513
AEN97327.1
Resolvase; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
  
    0.482
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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