STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98124.1Hypothetical protein. (302 aa)    
Predicted Functional Partners:
AEN98125.1
Hypothetical protein; COG5340 Predicted transcriptional regulator.
 
   
 0.956
AEN98123.1
Hypothetical protein.
       0.727
AEN98415.1
Hypothetical protein; COG0358 DNA primase (bacterial type).
 
     0.454
AEN98127.1
Transposase IS200-like protein; COG1943 Transposase and inactivated derivatives.
  
    0.431
AEN98126.1
Hypothetical protein.
       0.416
AEN97578.1
Type 12 methyltransferase; COG0500 SAM-dependent methyltransferases.
  
    0.411
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.