Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98163.1Mobilization protein. (235 aa)    
Predicted Functional Partners:
AEN98164.1
Hypothetical protein; COG3843 Type IV secretory pathway, VirD2 components (relaxase).
 
    0.947
AEN98175.1
DNA repair protein; COG4227 Antirestriction protein.
 
     0.645
AEN98226.1
COG3081 Nucleoid-associated protein.
  
     0.645
AEN98184.1
Peptidase, M23 family protein; COG0739 Membrane proteins related to metalloendopeptidases.
 
     0.614
AEN98161.1
Transcriptional regulator, putative; COG2378 Predicted transcriptional regulator.
       0.568
AEN98162.1
Hypothetical protein.
       0.568
AEN98182.1
Hypothetical protein.
  
     0.560
AEN98187.1
Hypothetical protein.
  
     0.538
AEN95425.1
TRAG family protein; COG3505 Type IV secretory pathway, VirD4 components.
 
     0.522
AEN98165.1
Transcriptional regulator, XRE family protein; COG1396 Predicted transcriptional regulators.
 
     0.515
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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