Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98204.1Hypothetical protein. (64 aa)    
Predicted Functional Partners:
AEN98205.1
COG1484 DNA replication protein.
 
     0.879
AEN98206.1
Phage protein.
 
     0.825
AEN98211.1
Hypothetical protein.
  
     0.767
AEN97206.1
Sigma-24 (feci); COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.765
AEN98213.1
Sigma-24 (feci).
  
     0.765
AEN97204.1
Hypothetical protein.
  
     0.763
AEN98212.1
RNA polymerase, sigma-24 subunit, ecf subfamily protein.
  
     0.760
AEN97205.1
RNA polymerase, sigma-24 subunit, ecf subfamily protein.
  
     0.759
AEN97198.1
COG1484 DNA replication protein.
 
     0.677
AEN97203.1
Hypothetical protein.
  
     0.662
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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