Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98213.1Sigma-24 (feci). (150 aa)    
Predicted Functional Partners:
AEN98211.1
Hypothetical protein.
 
     0.925
AEN98212.1
RNA polymerase, sigma-24 subunit, ecf subfamily protein.
 
    
0.810
AEN97204.1
Hypothetical protein.
 
     0.774
AEN97197.1
Hypothetical protein.
  
     0.765
AEN98204.1
Hypothetical protein.
  
     0.765
AEN98210.1
Hypothetical protein.
 
     0.664
AEN97218.1
Hypothetical protein.
  
    0.587
AEN98223.1
Hypothetical protein.
  
    0.585
AEN98214.1
RNA polymerase, sigma-24 subunit, ecf subfamily (ecf subfamily RNA polymerase sigma-70 factor); COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
       0.549
AEN97198.1
COG1484 DNA replication protein.
  
    0.523
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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