Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98223.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
AEN98222.1
Hypothetical protein.
       0.744
AEN98224.1
Site-specific recombinase, resolvase family protein; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
     0.737
AEN96560.1
Hypothetical protein.
  
     0.618
AEN98212.1
RNA polymerase, sigma-24 subunit, ecf subfamily protein.
  
    0.587
AEN98213.1
Sigma-24 (feci).
  
    0.585
AEN97206.1
Sigma-24 (feci); COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
    0.583
AEN97205.1
RNA polymerase, sigma-24 subunit, ecf subfamily protein.
  
    0.571
AEN98204.1
Hypothetical protein.
  
     0.556
AEN97197.1
Hypothetical protein.
  
     0.550
AEN98225.1
Conjugal transfer protein; COG3505 Type IV secretory pathway, VirD4 components.
       0.515
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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