Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98259.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
AEN98262.1
Hypothetical protein.
 
  
 0.930
AEN98260.1
Hypothetical protein.
 
     0.910
AEN98258.1
Hypothetical protein; COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
     0.894
AEN98263.1
Hypothetical protein.
 
  
 0.886
AEN98265.1
Hypothetical protein.
 
  
 0.877
AEN98261.1
Hypothetical protein.
 
     0.868
AEN98256.1
Hypothetical protein; COG1716 FOG: FHA domain.
 
     0.845
secE
Hypothetical protein; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.774
AEN96476.1
Hypothetical protein.
  
     0.774
AEN96953.1
Hypothetical protein.
  
     0.774
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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