Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEN98345.1Hypothetical protein. (45 aa)    
Predicted Functional Partners:
AEN98346.1
Radical SAM domain-containing protein; COG0535 Predicted Fe-S oxidoreductases.
       0.642
AEN98347.1
Radical SAM domain-containing protein; COG0641 Arylsulfatase regulator (Fe-S oxidoreductase).
       0.642
AEN98348.1
Lipid A export ATP-binding/permease MsbA; COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.642
AEN98344.1
COG1404 Subtilisin-like serine proteases.
       0.458
AEN98343.1
Radical SAM domain-containing protein; COG0535 Predicted Fe-S oxidoreductases.
       0.426
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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