Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98422.1COG0716 Flavodoxins. (84 aa)    
Predicted Functional Partners:
AEN98328.1
COG0716 Flavodoxins.
 
     0.974
AEN98424.1
COG0789 Predicted transcriptional regulators.
 
     0.655
AEN97241.1
alpha-L-rhamnosidase.
  
   0.654
AEN98423.1
Hypothetical protein; COG1454 Alcohol dehydrogenase, class IV.
       0.596
AEN98425.1
COG3973 Superfamily I DNA and RNA helicases.
       0.409
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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