STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98448.1COG1982 Arginine/lysine/ornithine decarboxylases. (489 aa)    
Predicted Functional Partners:
AEN98447.1
COG0194 Guanylate kinase.
       0.782
AEN98446.1
COG1728 Uncharacterized protein conserved in bacteria.
  
    0.747
AEN98443.1
Hypothetical protein; COG4123 Predicted O-methyltransferase.
  
    0.730
AEN98444.1
Hypothetical protein; COG1774 Uncharacterized homolog of PSP1.
  
    0.722
AEN98445.1
COG2812 DNA polymerase III, gamma/tau subunits.
       0.714
AEN96655.1
Aluminum resistance protein; COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance.
 
   
 0.711
rsmI
Tetrapyrrole (corrin/porphyrin) methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.620
AEN98449.1
Hypothetical protein; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
       0.568
AEN97455.1
COG0641 Arylsulfatase regulator (Fe-S oxidoreductase).
 
     0.507
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 0.495
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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