STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN98459.1Xylan 1,4-beta-xylosidase; COG2207 AraC-type DNA-binding domain-containing proteins. (328 aa)    
Predicted Functional Partners:
AEN97511.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.768
AEN97402.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.767
AEN95368.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
   0.764
AEN97388.1
Two-component system, response regulator YesN; COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
  
     0.757
AEN98046.1
Two-component system, response regulator YesN; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.752
AEN97246.1
AraC family transcriptional regulator; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
     0.724
AEN95940.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
   0.709
AEN96282.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.697
AEN97935.1
AraC family transcription regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.683
AEN97235.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.631
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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