STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII49455.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (110 aa)    
Predicted Functional Partners:
AII49456.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    
0.843
AII49454.1
Fe-S cluster protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.801
AII49457.1
Organic colvent ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the RNR ribonuclease family.
       0.549
AII49459.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.549
ubiX
Amino acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.547
ycf12
Photosystem II reaction center protein ycf12; A core subunit of photosystem II (PSII); Belongs to the Ycf12 family.
       0.542
AII49460.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.465
Your Current Organism:
Synechococcus sp. KORDI52
NCBI taxonomy Id: 585425
Other names: S. sp. KORDI-52, Synechococcus sp. KORDI-52
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