STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ52556.1Cyclic diguanylate phosphodiesterase (EAL) domain protein; COG: COG2200. (564 aa)    
Predicted Functional Partners:
EEJ52377.1
Diguanylate cyclase (GGDEF) domain protein; COG: COG3706.
 0.994
EEJ50143.1
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199.
 
 0.988
EEJ51754.1
Diguanylate cyclase (GGDEF) domain protein; COG: COG3706.
 
 0.982
fliN
Flagellar motor switch protein FliN; COG: COG1776.
  
 
 0.973
nifJ
Pyruvate synthase; COG: COG0674.
    
 0.965
EEJ51168.1
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199.
 
 0.910
EEJ52555.1
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199.
     0.893
EEJ50995.1
CheW-like protein; COG: COG0835.
  
 0.887
EEJ50327.1
Hypothetical protein.
  
 0.887
EEJ51192.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
  
 0.886
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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