STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygeWPutative carbamoyltransferase YgeW; COG: COG0078; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (415 aa)    
Predicted Functional Partners:
arcC
Carbamate kinase; COG: COG0549; Belongs to the carbamate kinase family.
 
 
 0.978
argG
Argininosuccinate synthase; COG: COG0137; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.960
EEJ52474.1
Putative selenium metabolism hydrolase; COG: COG0624.
 
 
 0.959
EEJ52350.1
Hypothetical protein.
  
 
 0.879
EEJ52478.1
Putative selenate reductase, YgfK subunit; COG: COG0493.
 
  
 0.833
pyrB
Aspartate carbamoyltransferase; COG: COG0540; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
    
 0.831
EEJ52477.1
Putative selenium metabolism protein SsnA; COG: COG0402.
 
    0.820
pyrI
Aspartate carbamoyltransferase regulatory chain, allosteric domain protein; COG: COG1781.
    
  0.815
argE
Peptidase, ArgE/DapE family; COG: COG0624.
  
 
 0.812
mop
Selenium-dependent molybdenum hydroxylase 1; COG: COG1529.
 
     0.770
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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