STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ52420.1WD domain, G-beta repeat protein. (1031 aa)    
Predicted Functional Partners:
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.935
EEJ52112.1
alanine--tRNA ligase; COG: COG0013.
   
 0.890
alaS
Putative alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.890
EEJ51121.1
Threonine/alanine tRNA ligase second additional domain protein; COG: COG2872; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.890
EEJ52525.1
Hypothetical protein.
    
 0.888
EEJ50909.1
Hypothetical protein.
    
 0.888
EEJ50258.1
Tetratricopeptide repeat protein.
    
 0.888
EEJ50087.1
Tetratricopeptide repeat protein.
    
 0.888
EEJ51867.1
SNF2 family N-terminal domain protein; COG: COG0553.
   
 0.851
EEJ52418.1
Ankyrin repeat protein.
  
 
 0.847
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.