STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yclMAspartate kinase; COG: COG0527; Belongs to the aspartokinase family. (438 aa)    
Predicted Functional Partners:
asd
Aspartate-semialdehyde dehydrogenase; COG: COG0136; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 0.996
lysA
Putative diaminopimelate decarboxylase; COG: COG0019; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 0.975
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
 
 
 0.946
argG
Argininosuccinate synthase; COG: COG0137; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.932
EEJ51574.1
Aminotransferase, class I/II; COG: COG0436.
  
 0.912
EEJ51634.1
Homoserine dehydrogenase; COG: COG0460.
 0.894
ansA
L-asparaginase, type I; COG: COG0252.
     
 0.892
pyrB
Aspartate carbamoyltransferase; COG: COG0540; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.889
pheA
Prephenate dehydratase; COG: COG0077.
 
 
 0.867
thrC
Threonine synthase; COG: COG0498.
  
 
 0.848
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.