STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ52170.1Hypothetical protein; COG: COG1937. (121 aa)    
Predicted Functional Partners:
actP1
Copper-exporting ATPase; COG: COG2217.
 
  
 0.885
EEJ52632.1
Heavy metal-associated domain protein.
  
  
 0.684
EEJ51005.1
RNA polymerase sigma factor, FliA/WhiG family; COG: COG1191; Belongs to the sigma-70 factor family.
    
   0.599
fliN
Flagellar motor switch protein FliN; COG: COG1776.
    
   0.599
EEJ52167.1
DALR anticodon binding domain protein; COG: COG0018; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.493
hflB
ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
       0.432
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
   
 0.430
EEJ52203.1
arginine--tRNA ligase domain protein; COG: COG0018; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.406
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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