STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ52029.1Cation transport protein; COG: COG0168. (375 aa)    
Predicted Functional Partners:
EEJ52030.1
TrkA N-terminal domain protein; COG: COG0569.
 
 
 0.988
EEJ52055.1
Hypothetical protein; COG: COG0168.
     0.986
nifJ
Pyruvate synthase; COG: COG0674.
   
 
 0.833
EEJ51671.1
TrkA N-terminal domain protein; COG: COG0569.
  
 
 0.764
EEJ52419.1
Hypothetical protein.
  
 
 0.761
trpS
tryptophan--tRNA ligase; COG: COG0180; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.577
recU
Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.
       0.561
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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