STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ51790.1DAK2 domain fusion protein YloV; COG: COG1461. (567 aa)    
Predicted Functional Partners:
EEJ50150.1
EDD domain protein, DegV family; COG: COG1307.
   0.995
EEJ51791.1
Hypothetical protein; COG: COG1302.
 
  
 0.986
EEJ52258.1
EDD domain protein, DegV family; COG: COG1307.
   0.985
EEJ50862.1
EDD domain protein, DegV family; COG: COG1307.
   0.965
EEJ51789.1
Putative ATP-dependent DNA helicase RecG; COG: COG1200.
  
    0.692
EEJ52005.1
PHP domain protein; COG: COG2176.
 
     0.593
EEJ51786.1
Hypothetical protein.
 
     0.593
EEJ51788.1
RNA methyltransferase, RsmD family; COG: COG0742.
 
     0.577
polC
Putative DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
     0.571
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.505
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.