STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ51317.1DNA-binding helix-turn-helix protein. (300 aa)    
Predicted Functional Partners:
EEJ51799.1
Competence/damage-inducible domain protein CinA; COG: COG1546; Belongs to the CinA family.
    
 0.755
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.721
nifJ
Pyruvate synthase; COG: COG0674.
    
  0.699
EEJ50643.1
DNA-binding helix-turn-helix protein.
  
     0.640
EEJ50641.1
DNA-binding helix-turn-helix protein.
  
     0.639
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.538
EEJ51319.1
Cell shape determining protein, MreB/Mrl family; COG: COG1077.
       0.538
EEJ51316.1
comF family protein; COG: COG1040.
       0.510
EEJ50504.1
Hypothetical protein.
  
     0.469
EEJ52377.1
Diguanylate cyclase (GGDEF) domain protein; COG: COG3706.
    
 
 0.407
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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