Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEJ51333.1 | EEJ51334.1 | HMPREF6123_1393 | HMPREF6123_1394 | R3H domain protein; COG: COG1847. | Membrane protein insertase, YidC/Oxa1 family; COG: COG0706. | 0.959 |
EEJ51333.1 | EEJ51335.1 | HMPREF6123_1393 | HMPREF6123_1395 | R3H domain protein; COG: COG1847. | Hypothetical protein. | 0.444 |
EEJ51333.1 | rnpA | HMPREF6123_1393 | HMPREF6123_1396 | R3H domain protein; COG: COG1847. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.898 |
EEJ51333.1 | rpmH | HMPREF6123_1393 | HMPREF6123_1397 | R3H domain protein; COG: COG1847. | Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.604 |
EEJ51334.1 | EEJ51333.1 | HMPREF6123_1394 | HMPREF6123_1393 | Membrane protein insertase, YidC/Oxa1 family; COG: COG0706. | R3H domain protein; COG: COG1847. | 0.959 |
EEJ51334.1 | EEJ51335.1 | HMPREF6123_1394 | HMPREF6123_1395 | Membrane protein insertase, YidC/Oxa1 family; COG: COG0706. | Hypothetical protein. | 0.473 |
EEJ51334.1 | rnpA | HMPREF6123_1394 | HMPREF6123_1396 | Membrane protein insertase, YidC/Oxa1 family; COG: COG0706. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.941 |
EEJ51334.1 | rpmH | HMPREF6123_1394 | HMPREF6123_1397 | Membrane protein insertase, YidC/Oxa1 family; COG: COG0706. | Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.775 |
EEJ51335.1 | EEJ51333.1 | HMPREF6123_1395 | HMPREF6123_1393 | Hypothetical protein. | R3H domain protein; COG: COG1847. | 0.444 |
EEJ51335.1 | EEJ51334.1 | HMPREF6123_1395 | HMPREF6123_1394 | Hypothetical protein. | Membrane protein insertase, YidC/Oxa1 family; COG: COG0706. | 0.473 |
EEJ51335.1 | rnpA | HMPREF6123_1395 | HMPREF6123_1396 | Hypothetical protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.773 |
EEJ51335.1 | rpmH | HMPREF6123_1395 | HMPREF6123_1397 | Hypothetical protein. | Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.509 |
rnpA | EEJ51333.1 | HMPREF6123_1396 | HMPREF6123_1393 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | R3H domain protein; COG: COG1847. | 0.898 |
rnpA | EEJ51334.1 | HMPREF6123_1396 | HMPREF6123_1394 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Membrane protein insertase, YidC/Oxa1 family; COG: COG0706. | 0.941 |
rnpA | EEJ51335.1 | HMPREF6123_1396 | HMPREF6123_1395 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Hypothetical protein. | 0.773 |
rnpA | rpmH | HMPREF6123_1396 | HMPREF6123_1397 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.983 |
rpmH | EEJ51333.1 | HMPREF6123_1397 | HMPREF6123_1393 | Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | R3H domain protein; COG: COG1847. | 0.604 |
rpmH | EEJ51334.1 | HMPREF6123_1397 | HMPREF6123_1394 | Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | Membrane protein insertase, YidC/Oxa1 family; COG: COG0706. | 0.775 |
rpmH | EEJ51335.1 | HMPREF6123_1397 | HMPREF6123_1395 | Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | Hypothetical protein. | 0.509 |
rpmH | rnpA | HMPREF6123_1397 | HMPREF6123_1396 | Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.983 |