STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsA1ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (498 aa)    
Predicted Functional Partners:
EEJ51221.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG1172; Belongs to the binding-protein-dependent transport system permease family.
 0.994
EEJ50537.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG1172; Belongs to the binding-protein-dependent transport system permease family.
 0.979
EEJ51220.1
Hypothetical protein; COG: COG1879.
  0.966
EEJ50400.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG1172; Belongs to the binding-protein-dependent transport system permease family.
 0.961
EEJ50279.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG1172; Belongs to the binding-protein-dependent transport system permease family.
 0.926
EEJ52470.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG4211; Belongs to the binding-protein-dependent transport system permease family.
 
 0.923
EEJ52107.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG4177; Belongs to the binding-protein-dependent transport system permease family.
   
  0.896
EEJ51258.1
Sugar-binding domain protein; COG: COG1879.
 
  0.840
EEJ50539.1
Sugar-binding domain protein.
 
  0.819
EEJ50402.1
Sugar-binding domain protein; COG: COG1879.
 
  0.793
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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