STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ51103.1Trypsin; COG: COG0265. (499 aa)    
Predicted Functional Partners:
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
 
 0.897
EEJ51191.1
Hypothetical protein; COG: COG0265.
  
  
 
0.834
glpK
Glycerol kinase; COG: COG0554; Belongs to the FGGY kinase family.
   
 0.808
EEJ51102.1
Hypothetical protein.
       0.773
cysS
cysteine--tRNA ligase; COG: COG0215; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
   
 0.621
nudF
Hydrolase, NUDIX family; COG: COG0494.
    
  0.611
EEJ51106.1
Peptidase, S41 family; COG: COG0793.
 
  
 0.567
EEJ51312.1
Hypothetical protein.
    
  0.565
EEJ50914.1
acyl-CoA dehydrogenase, C-terminal domain protein.
    
  0.565
lon
Endopeptidase La; COG: COG0466.
    
 0.558
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.