STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
malYAminotransferase, class I/II; COG: COG1168. (389 aa)    
Predicted Functional Partners:
metB
Cys/Met metabolism PLP-dependent enzyme; COG: COG0626.
 
 
 0.965
cysK
Cysteine synthase A; COG: COG0031; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.914
EEJ51574.1
Aminotransferase, class I/II; COG: COG0436.
    
0.895
EEJ51634.1
Homoserine dehydrogenase; COG: COG0460.
    
 0.894
ilvA
Threonine ammonia-lyase; COG: COG1171.
    
  0.892
cysD1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; COG: COG2873.
   
 0.835
cysD2
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; COG: COG2873.
   
 0.831
aspC
Aminotransferase, class I/II; COG: COG0436.
 
  
0.824
dpaL
Diaminopropionate ammonia-lyase; COG: COG1171.
    
  0.745
EEJ50911.1
Methionine synthase, vitamin-B12 independent.
    
  0.735
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.