STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ50349.1Hypothetical protein; COG: COG4866. (331 aa)    
Predicted Functional Partners:
EEJ50348.1
Hypothetical protein.
     0.976
EEJ50547.1
Hypothetical protein.
  
     0.722
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
 
      0.696
EEJ52335.1
Putative N-acetylmuramoyl-L-alanine amidase.
  
     0.593
EEJ51895.1
SH3 domain protein.
  
     0.545
EEJ50513.1
Hypothetical protein.
  
     0.536
EEJ50351.1
Methyltransferase small domain protein; COG: COG4123.
 
     0.525
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.495
EEJ52346.1
Hypothetical protein.
  
     0.494
EEJ50848.1
Cell wall-binding repeat protein.
  
     0.463
Your Current Organism:
Oribacterium sinus
NCBI taxonomy Id: 585501
Other names: O. sinus F0268, Oribacterium sinus F0268, Oribacterium sinus str. F0268, Oribacterium sinus strain F0268
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.