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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EER74761.1ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily. (351 aa)    
Predicted Functional Partners:
EER74763.1
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
 
 0.998
EER74609.1
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
 
 0.995
EER74764.1
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
 
 0.993
EER74765.1
ABC transporter, substrate-binding protein, family 5; COG: COG4166; Pfam: PF00496; InterPro: IPR000914.
 
 
 0.981
EER74610.1
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
 
 0.978
oppA1
ABC transporter, substrate-binding protein, family 5; COG: COG4166; Pfam: PF00496; InterPro: IPR000914.
 
 
 0.955
oppA
ABC transporter, substrate-binding protein, family 5; COG: COG4166; Pfam: PF00496; InterPro: IPR000914.
 
 
 0.952
EER74249.1
ABC transporter, substrate-binding protein, family 5; COG: COG4166; Pfam: PF00496; InterPro: IPR000914.
 
 
 0.950
EER74611.1
ABC transporter, substrate-binding protein, family 5; COG: COG4166; Pfam: PF00496; InterPro: IPR000914.
 
 
 0.949
EER74760.1
ABC transporter, ATP-binding protein; COG: COG4608; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
 
  
0.908
Your Current Organism:
Weissella paramesenteroides
NCBI taxonomy Id: 585506
Other names: W. paramesenteroides ATCC 33313, Weissella paramesenteroides ATCC 33313, Weissella paramesenteroides str. ATCC 33313, Weissella paramesenteroides strain ATCC 33313
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